Package index • uid

All functions

calculate_activity(): Calculate Activity Index Based on Zone Transitions

check_overwrite_permissions(): Check for Existing Output Files and Prompt Overwrite Options

clean_raw_uid(): Wrapper to clean UID temperature CSV: read, flag outliers, downsample, and plot

downsample_activity(): Downsample activity index data to fixed intervals

downsample_temperature(): Downsample temperature data to fixed intervals

estimate_sampling_interval(): Estimate Sampling Interval from Grouped Data

flag_temperature_outliers(): Flag temperature outliers based on rolling difference threshold

interpolate_gaps(): Interpolate Short Gaps in UID Time Series Data

plot_downsampled_temperature(): Plot and save downsampled temperature trace

plot_outliers(): Plot and save outlier diagnostic

process_all_uid_files(): Process All UID CSV Files in Batch

quantify_temp_bouts(): Quantify bouts of temperature above or below a threshold

read_raw_uid_csv(): Read and clean raw UID CSV file

uid_sample_data: Example UID Sample Data